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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 424ChIP-seq
  • 32DNase-seq
  • 24ATAC-seq
  • 1FAIRE-seq
Assay category
  • 424DNA binding
  • 57DNA accessibility
Target of assay
  • 340transcription factor
  • 81recombinant protein
  • 79histone
  • 79histone modification
  • 73RNA binding protein
  • 41narrow histone mark
  • 38broad histone mark
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 255November, 2017
  • 56November, 2018
  • 47June, 2019
  • 27December, 2018
  • 23October, 2019
  • 20August, 2017
  • 15January, 2019
  • 14December, 2017
  • 14September, 2018
  • 5September, 2017
  • 4May, 2019
  • 1November, 2020
Available data
  • 1485bam
  • 1397bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 481Homo sapiens
Biosample type
  • tissue
  • 355cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 309liver
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 29pancreas
  • 21vasculature
  • 18connective tissue
  • 17blood vessel
  • 17kidney
  • 13vein
  • 11brain
  • 9musculature of body
  • 6heart
  • 3eye
Project
  • 481AMP
Genome assembly (visualization)
  • 470hg19
  • 443GRCh38
Lab
  • 481AMP-T2D consortium
Audit category:
  • 23inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 12missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

481 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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