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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
43
single cell RNA-seq
3
ATAC-seq
3
DNase-seq
Assay category
88
DNA binding
43
Transcription
6
DNA accessibility
Target of assay
63
histone
63
histone modification
34
narrow histone mark
28
broad histone mark
24
transcription factor
6
RNA binding protein
3
chromatin remodeller
1
control
Date released
277
November, 2017
265
May, 2021
107
February, 2021
94
August, 2017
90
May, 2020
72
September, 2018
57
November, 2018
48
July, 2018
47
August, 2021
47
June, 2019
46
October, 2019
43
April, 2018
36
December, 2017
31
February, 2018
27
December, 2018
20
January, 2019
18
July, 2019
12
November, 2019
9
March, 2020
7
August, 2020
6
January, 2018
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
2
October, 2018
Available data
155
bam
150
fastq
137
bigWig
76
bed narrowPeak
43
tsv
26
tagAlign
20
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
7
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
137
Homo sapiens
Biosample type
tissue
89
primary cell
48
in vitro differentiated cells
Organ
62
pancreas
50
connective tissue
50
epithelium
Project
137
AMP
Genome assembly (visualization)
137
hg19
133
GRCh38
Lab
137
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
tissue
files.file_type!
hdf5
BIOSAMPLE
ASSAY
137 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
3
1
pancreatic beta cell
7
3
1
pancreatic acinar cell
6
1
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in vitro differentiated cells
adipocyte
47
1
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