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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 775ChIP-seq
  • 383total RNA-seq
  • 100single cell RNA-seq
  • 93ATAC-seq
  • 32DNase-seq
  • 5GRO-seq
  • 5Hi-C
  • 2small RNA-seq
  • 1FAIRE-seq
  • 1WGBS
Assay category
  • 775DNA binding
  • 485Transcription
  • 126DNA accessibility
  • 53D chromatin structure
  • 1DNA methylation
Target of assay
  • 403transcription factor
  • 347histone
  • 347histone modification
  • 174broad histone mark
  • 172narrow histone mark
  • 88recombinant protein
  • 79RNA binding protein
  • 34chromatin remodeller
  • 23control
  • 2other context
  • 2other post-translational modification
Date released
  • 277November, 2017
  • 265May, 2021
  • 107February, 2021
  • 94August, 2017
  • 90May, 2020
  • 72September, 2018
  • 57November, 2018
  • 48July, 2018
  • 47August, 2021
  • 47June, 2019
  • 47October, 2019
  • 43April, 2018
  • 36December, 2017
  • 31February, 2018
  • 27December, 2018
  • 22July, 2019
  • 20January, 2019
  • 12November, 2019
  • 9March, 2020
  • 7August, 2020
  • 6January, 2018
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 4May, 2019
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
  • 2October, 2018
Available data
  • 1485bam
  • 1397bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 1397Homo sapiens
Biosample type
  • tissue
  • 613primary cell
  • 522cell line
  • 259in vitro differentiated cells
  • 3stem cell
Organ
  • 357liver
  • 301epithelium
  • 250pancreas
  • 89connective tissue
  • 85vasculature
  • 80blood vessel
  • 67heart
  • 58artery
  • 55blood
  • 55bodily fluid
  • 40kidney
  • 29embryo
  • 20brain
  • 15vein
  • 11musculature of body
  • 3eye
  • 2adipose tissue
  • 1pericardium
Project
  • 1203AMP
  • 184T1D
  • 10HPAP
Genome assembly (visualization)
  • 1369hg19
  • 1218GRCh38
  • 5hg18
Lab
  • 1148AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
Audit category:
  • 189inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 61missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

1397 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
GRO-seq
Hi-C
small RNA-seq
FAIRE-seq
WGBS
primary cell
monocyte84532
pancreatic alpha cell7101213
CD8-positive, alpha-beta T cell3342
pancreatic beta cell7101210
pancreatic ductal cell134104
cell line
HepG232651
smooth muscle cell of the coronary artery452
GM12878541
EndoC_BH113332
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte47431
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm1241
stem cell
hESC21
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