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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
3
single cell RNA-seq
1
pCHi-C
Assay category
53
DNA binding
3
Transcription
Target of assay
25
histone
25
histone modification
22
transcription factor
12
broad histone mark
12
narrow histone mark
6
control
4
RNA binding protein
2
chromatin remodeller
Date released
53
August, 2017
2
July, 2018
1
April, 2018
1
August, 2018
Available data
163
bam
147
bigWig
75
tsv
74
bed narrowPeak
58
fastq
21
bed bed3+
20
tagAlign
18
bigBed narrowPeak
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
57
Homo sapiens
Biosample type
54
in vitro differentiated cells
tissue
3
primary cell
Organ
324
liver
258
pancreas
253
epithelium
60
blood
60
bodily fluid
57
connective tissue
27
embryo
3
brain
2
vasculature
1
adipose tissue
1
blood vessel
0
heart
Project
57
AMP
Genome assembly (visualization)
51
GRCh38
51
hg19
Lab
57
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
tissue
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ChIP-seq
single cell RNA-seq
pCHi-C
in vitro differentiated cells
adipocyte
53
white fat cell
1
primary cell
pancreatic stellate cell
3
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