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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 637ChIP-seq
  • 140total RNA-seq
  • 128single cell RNA-seq
  • 32ATAC-seq
  • 27snATAC-seq
  • 7WGBS
  • 5GRO-seq
  • 2DNase-seq
  • 1Hi-C
  • 1RRBS
  • 1pCHi-C
Assay category
  • 637DNA binding
  • 268Transcription
  • 61DNA accessibility
  • 8DNA methylation
  • 13D chromatin structure
Target of assay
  • 375transcription factor
  • 156histone
  • 156histone modification
  • 101control
  • 82narrow histone mark
  • 82recombinant protein
  • 74RNA binding protein
  • 73broad histone mark
  • 34chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 324November, 2017
  • 112August, 2017
  • 76February, 2023
  • 73September, 2018
  • 62November, 2018
  • 48July, 2018
  • 46December, 2017
  • 45February, 2021
  • 41September, 2020
  • 39February, 2018
  • 38April, 2018
  • 28December, 2018
  • 23January, 2019
  • 7August, 2020
  • 5January, 2018
  • 5September, 2017
  • 4August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 1485bam
  • 1397bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 981Homo sapiens
Biosample type
  • 427cell line
  • 409primary cell
  • tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 382liver
  • 258pancreas
  • 257epithelium
  • 60blood
  • 60bodily fluid
  • 58connective tissue
  • 27embryo
  • 9brain
  • 6vasculature
  • 3blood vessel
  • 1adipose tissue
Project
  • 812AMP
  • 169HPAP
Genome assembly (visualization)
  • 714hg19
  • 671GRCh38
  • 5hg18
Lab
  • 812AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
Audit category:
  • 27audit script error
  • 11inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 63missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

981 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
GRO-seq
DNase-seq
Hi-C
RRBS
pCHi-C
cell line
HepG2360511
GM1287860
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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