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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
21
snATAC-seq
6
Hi-C
Assay category
52
Transcription
21
DNA accessibility
6
3D chromatin structure
Date released
54
May, 2022
19
September, 2020
2
March, 2020
2
October, 2019
1
August, 2021
1
March, 2023
Available data
1168
bam
1096
bigWig
724
fastq
694
bed narrowPeak
405
bigBed narrowPeak
371
tsv
153
tagAlign
87
bed broadPeak
87
bigBed broadPeak
73
zippedFastqFolder
47
bed bed3+
8
bedpe bed3+
7
bed bed3
7
bed bedgraph
6
hic
5
bed bedMethyl
5
bigBed bedMethyl
4
txt
3
hdf5
3
tar
2
csv
2
ibed
1
vcf
Organism
79
Homo sapiens
Biosample type
74
primary cell
tissue
4
in vitro differentiated cells
1
cell line
Organ
epithelium
84
pancreas
2
blood vessel
2
vasculature
2
vein
1
liver
Project
73
HPAP
5
AMP
1
ITG
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
73
Klaus Kaestner, Upenn
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Audit category:
4
inconsistent ontology term
biosample_type!
tissue
files.file_type!
tagAlign bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
79 results
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single cell RNA-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
chondrocytes
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
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