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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 12Hi-C
Assay category
  • 123D chromatin structure
Date released
  • 3March, 2020
  • 3October, 2019
  • 3October, 2022
  • 1August, 2021
  • 1March, 2023
  • 1November, 2019
Available data
  • 1485bam
  • 1397bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 12Homo sapiens
Biosample type
  • tissue
  • 6primary cell
  • 4in vitro differentiated cells
  • 2cell line
Organ
  • 6epithelium
  • 4pancreas
  • 2blood vessel
  • 2vasculature
  • 2vein
  • 1liver
Project
  • 8AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 11hg19
  • 1GRCh38
Lab
  • 7AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
Audit category:
  • 5inconsistent ontology term
  • 4audit script error
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

12 results

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Hi-C
primary cell
endothelial cell of umbilical vein2
chondrocytes1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
EndoC_BH11
HepG21
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