Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
70
single cell RNA-seq
1
ATAC-seq
Assay category
146
Transcription
1
DNA accessibility
Date released
33
April, 2018
33
July, 2018
26
February, 2021
26
September, 2018
6
May, 2021
5
December, 2019
5
July, 2019
3
August, 2018
3
March, 2020
3
October, 2019
2
October, 2018
1
June, 2018
1
November, 2019
Available data
298
bam
275
bigWig
169
fastq
147
tsv
123
bed narrowPeak
62
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
147
Homo sapiens
Biosample type
110
primary cell
35
cell line
tissue
2
in vitro differentiated cells
Organ
147
epithelium
136
pancreas
57
heart
54
artery
54
blood vessel
54
vasculature
21
connective tissue
20
liver
14
embryo
12
kidney
3
brain
2
adipose tissue
2
musculature of body
1
mammary gland
1
pericardium
Project
145
AMP
2
T1D
Genome assembly (visualization)
147
hg19
146
GRCh38
Lab
147
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
36
inconsistent ontology term
biosample_type!
tissue
lab.title!
Klaus Kaestner, Upenn
month_released!
December, 2017
BIOSAMPLE
ASSAY
147 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
primary cell
pancreatic alpha cell
10
12
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 11 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
Download