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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 390total RNA-seq
  • 102single cell RNA-seq
  • 13ATAC-seq
  • 11pCHi-C
  • 6WGBS
  • 2small RNA-seq
Assay category
  • 494Transcription
  • 13DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 135May, 2021
  • 107February, 2021
  • 48July, 2018
  • 46May, 2020
  • 43April, 2018
  • 26September, 2018
  • 24August, 2021
  • 18July, 2019
  • 17March, 2020
  • 15February, 2018
  • 12February, 2023
  • 8October, 2019
  • 7December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2019
Available data
  • 1485bam
  • 1397bigWig
  • 981fastq
  • 833bed narrowPeak
  • 524tsv
  • 481bigBed narrowPeak
  • 160tagAlign
  • 153zippedFastqFolder
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 68bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 524Homo sapiens
Biosample type
  • tissue
  • 270primary cell
  • 131in vitro differentiated cells
  • 119cell line
  • 4stem cell
Organ
  • 153epithelium
  • 142pancreas
  • 57heart
  • 54artery
  • 54blood vessel
  • 54vasculature
  • 21connective tissue
  • 20liver
  • 14embryo
  • 12kidney
  • 3brain
  • 2adipose tissue
  • 2musculature of body
  • 1mammary gland
  • 1pericardium
Project
  • 420AMP
  • 98T1D
  • 6HPAP
Genome assembly (visualization)
  • 484hg19
  • 483GRCh38
Lab
  • 413AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 9Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 147inconsistent ontology term
  • 2audit script error
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

524 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
pCHi-C
WGBS
small RNA-seq
primary cell
monocyte53
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1331
HepG2141
H1-hESC8
RCC 7860 vector11
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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