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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
42
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
63
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
3
February, 2023
October, 2022
Available data
1485
bam
1397
bigWig
981
fastq
833
bed narrowPeak
524
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
10
bedpe bed3+
9
hic
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
txt
2
csv
2
ibed
1
vcf
Organism
156
Homo sapiens
Biosample type
tissue
153
primary cell
3
in vitro differentiated cells
Organ
80
epithelium
80
pancreas
Project
153
HPAP
3
AMP
Genome assembly (visualization)
3
hg19
Lab
153
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
month_released!
October, 2022
BIOSAMPLE
ASSAY
156 results
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single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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