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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
42
ATAC-seq
41
WGBS
21
snATAC-seq
1
MPRA
Assay category
63
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
3
February, 2023
1
October, 2022
Available data
1408
bam
1322
bigWig
912
fastq
768
bed narrowPeak
521
tsv
416
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
98
bed broadPeak
98
bigBed broadPeak
60
bed bed3+
13
bedpe bed3+
12
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
4
tar
4
txt
3
cool
2
csv
2
hdf5
2
ibed
1
vcf
Organism
156
Homo sapiens
Biosample type
tissue
153
primary cell
3
in vitro differentiated cells
1
cell line
Organ
80
epithelium
80
pancreas
Project
153
HPAP
4
AMP
Genome assembly (visualization)
3
hg19
Lab
153
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
1
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
organ_slims!
bodily fluid
brain
BIOSAMPLE
ASSAY
157 results
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single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
MPRA
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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