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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
9
total RNA-seq
1
DNase-seq
1
RRBS
Assay category
121
DNA binding
9
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
49
transcription factor
45
histone
45
histone modification
27
control
23
broad histone mark
22
narrow histone mark
5
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
59
November, 2017
37
August, 2017
33
February, 2018
2
November, 2018
1
January, 2019
Available data
132
fastq
130
bam
108
bigWig
92
bed narrowPeak
62
bigBed narrowPeak
53
bed broadPeak
53
bigBed broadPeak
16
tagAlign
9
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
132
Homo sapiens
Biosample type
62
cell line
37
primary cell
33
in vitro differentiated cells
tissue
Organ
61
liver
26
epithelium
26
pancreas
12
embryo
1
blood
1
bodily fluid
Project
132
AMP
Genome assembly (visualization)
109
hg19
92
GRCh38
Lab
132
AMP-T2D consortium
Audit category:
14
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
132 results
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ChIP-seq
total RNA-seq
DNase-seq
RRBS
cell line
HepG2
61
GM12878
1
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
skeletal muscle myoblast
9
1
1
in vitro differentiated cells
pancreatic endoderm
9
3
endocrine cell
3
2
definitive endodermal cell
3
1
embryonic stem cell
3
1
posterior foregut
3
1
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