Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 121ChIP-seq
  • 9total RNA-seq
  • 1DNase-seq
  • 1RRBS
Assay category
  • 121DNA binding
  • 9Transcription
  • 1DNA accessibility
  • 1DNA methylation
Target of assay
  • 49transcription factor
  • 45histone
  • 45histone modification
  • 27control
  • 23broad histone mark
  • 22narrow histone mark
  • 5RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 59November, 2017
  • 37August, 2017
  • 33February, 2018
  • 2November, 2018
  • 1January, 2019
Available data
  • 132fastq
  • 130bam
  • 108bigWig
  • 92bed narrowPeak
  • 62bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 16tagAlign
  • 9tsv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 132Homo sapiens
Biosample type
  • 62cell line
  • 37primary cell
  • 33in vitro differentiated cells
  • tissue
Organ
  • 61liver
  • 26epithelium
  • 26pancreas
  • 12embryo
  • 1blood
  • 1bodily fluid
Project
  • 132AMP
Genome assembly (visualization)
  • 109hg19
  • 92GRCh38
Lab
  • 132AMP-T2D consortium
Audit category:
  • 14inconsistent control read length
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

132 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
RRBS
cell line
HepG261
GM128781
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast911
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego