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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 268ChIP-seq
  • 47total RNA-seq
  • 27single cell RNA-seq
  • 14ATAC-seq
  • 2DNase-seq
  • 1Hi-C
Assay category
  • 268DNA binding
  • 74Transcription
  • 16DNA accessibility
  • 13D chromatin structure
Target of assay
  • 175transcription factor
  • 82recombinant protein
  • 46histone
  • 46histone modification
  • 45control
  • 24narrow histone mark
  • 23RNA binding protein
  • 22broad histone mark
  • 7chromatin remodeller
Date released
  • 173November, 2017
  • 72September, 2018
  • 38November, 2018
  • 25July, 2018
  • 17August, 2017
  • 14February, 2018
  • 12January, 2019
  • 4December, 2018
  • 2October, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 359fastq
  • 358bam
  • 310bigWig
  • 219bed narrowPeak
  • 186bigBed narrowPeak
  • 74tsv
  • 8bed broadPeak
  • 8bigBed broadPeak
  • 2bed bed3+
  • 1tagAlign
Organism
  • 359Homo sapiens
Biosample type
  • 227cell line
  • tissue
  • 115primary cell
  • 17in vitro differentiated cells
Organ
  • 211liver
  • 105pancreas
  • 78epithelium
  • 16blood
  • 16bodily fluid
  • 5connective tissue
  • 4embryo
Project
  • 359AMP
Genome assembly (visualization)
  • 308hg19
  • 305GRCh38
Lab
  • 359AMP-T2D consortium
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 45missing controlled_by
Audit category:
  • 7inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

359 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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