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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 99ChIP-seq
  • 37single cell RNA-seq
  • 5GRO-seq
Assay category
  • 99DNA binding
  • 37Transcription
Target of assay
  • 57transcription factor
  • 34RNA binding protein
  • 28histone
  • 28histone modification
  • 20chromatin remodeller
  • 16narrow histone mark
  • 13control
  • 12broad histone mark
Date released
  • 46December, 2017
  • 22November, 2017
  • 21April, 2018
  • 20November, 2018
  • 11July, 2018
  • 5August, 2017
  • 5January, 2018
  • 5January, 2019
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1September, 2018
  • 1September, 2020
Available data
  • 140fastq
  • 133bam
  • 123bigWig
  • 79bed narrowPeak
  • 57bigBed narrowPeak
  • 34tsv
  • 15bed bed3+
  • 2csv
  • 1zippedFastqFolder
Organism
  • 141Homo sapiens
Biosample type
  • 52in vitro differentiated cells
  • 48cell line
  • tissue
  • 37primary cell
  • 4stem cell
Organ
  • 53liver
  • 45epithelium
  • 26pancreas
  • 14embryo
  • 10blood
  • 10bodily fluid
  • 5connective tissue
Project
  • 140AMP
  • 1HPAP
Genome assembly (visualization)
  • 122hg19
  • 121GRCh38
  • 5hg18
Lab
  • 140AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 21inconsistent control read length
  • 8inconsistent control run_type
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

141 results

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Clear Filters
ChIP-seq
single cell RNA-seq
GRO-seq
in vitro differentiated cells
hepatocyte15
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
cell line
HepG238
GM1287810
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
stem cell
hESC31
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