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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 88ChIP-seq
  • 31total RNA-seq
  • 28single cell RNA-seq
  • 6WGBS
Assay category
  • 88DNA binding
  • 59Transcription
  • 6DNA methylation
Target of assay
  • 79transcription factor
  • 8RNA binding protein
  • 6control
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 25December, 2018
  • 18September, 2020
  • 17April, 2018
  • 16November, 2018
  • 15February, 2018
  • 8January, 2019
  • 8July, 2018
  • 6February, 2021
  • 1June, 2018
Available data
  • 151fastq
  • 129bam
  • 123bigWig
  • 82bed narrowPeak
  • 82bigBed narrowPeak
  • 47tsv
  • 2zippedFastqFolder
Organism
  • 153Homo sapiens
Biosample type
  • 88cell line
  • tissue
  • 50primary cell
  • 15in vitro differentiated cells
Organ
  • 45blood
  • 45bodily fluid
  • 43liver
  • 40epithelium
  • 40pancreas
  • 4embryo
Project
  • 129AMP
  • 24HPAP
Genome assembly (visualization)
  • 123GRCh38
  • 123hg19
Lab
  • 129AMP-T2D consortium
  • 24Klaus Kaestner, Upenn
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

153 results

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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
cell line
GM1287845
HepG243
primary cell
pancreatic alpha cell1546
pancreatic beta cell14
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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