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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204ChIP-seq
  • 2DNase-seq
  • 1RRBS
Assay category
  • 204DNA binding
  • 2DNA accessibility
  • 1DNA methylation
Target of assay
  • 96transcription factor
  • 67histone
  • 67histone modification
  • 41control
  • 35narrow histone mark
  • 32broad histone mark
  • 20RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 40August, 2017
  • 23December, 2017
  • 22February, 2018
  • 7November, 2018
  • 1January, 2019
Available data
  • 207fastq
  • 205bam
  • 175bigWig
  • 161bed narrowPeak
  • 121bigBed narrowPeak
  • 75bed broadPeak
  • 75bigBed broadPeak
  • 24tagAlign
  • 14bed bed3+
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 207Homo sapiens
Biosample type
  • 113cell line
  • tissue
  • 48primary cell
  • 44in vitro differentiated cells
  • 2stem cell
Organ
  • 112liver
  • 31epithelium
  • 22pancreas
  • 18embryo
  • 9brain
  • 6vasculature
  • 3blood vessel
  • 1blood
  • 1bodily fluid
  • 1connective tissue
Project
  • 207AMP
Genome assembly (visualization)
  • 181hg19
  • 148GRCh38
Lab
  • 207AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 9missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

207 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
GM128781
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
stem cell
hESC2
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