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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
47
ATAC-seq
16
snATAC-seq
5
GRO-seq
5
total RNA-seq
1
Hi-C
1
single cell RNA-seq
Assay category
74
DNA binding
63
DNA accessibility
6
Transcription
1
3D chromatin structure
Target of assay
41
transcription factor
27
control
12
recombinant protein
6
histone
6
histone modification
5
broad histone mark
1
RNA binding protein
1
chromatin remodeller
1
narrow histone mark
Date released
53
November, 2017
39
May, 2022
16
February, 2021
13
December, 2017
10
January, 2019
6
August, 2017
5
January, 2018
5
September, 2017
1
December, 2018
1
September, 2020
Available data
109
fastq
87
bam
65
bigWig
50
bed narrowPeak
40
zippedFastqFolder
36
bigBed narrowPeak
9
bed bed3+
5
tsv
4
bed broadPeak
4
bigBed broadPeak
Organism
149
Homo sapiens
Biosample type
64
cell line
64
primary cell
tissue
18
in vitro differentiated cells
3
stem cell
Organ
59
liver
48
epithelium
47
pancreas
6
embryo
5
blood
5
bodily fluid
3
connective tissue
Project
93
AMP
56
HPAP
Genome assembly (visualization)
60
hg19
55
GRCh38
5
hg18
Lab
93
AMP-T2D consortium
56
Klaus Kaestner, Upenn
Audit category:
16
audit script error
1
inconsistent ontology term
Audit category:
15
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
total RNA-seq
Hi-C
single cell RNA-seq
cell line
HepG2
53
5
1
GM12878
5
primary cell
pancreatic alpha cell
25
Langerhans cell
16
1
pancreatic beta cell
16
pancreatic acinar cell
6
in vitro differentiated cells
pancreatic endoderm
4
1
Posterior foregut
2
1
adipocyte
3
definitive endodermal cell
2
1
primitive gut cell
2
1
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stem cell
hESC
2
1
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