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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 74ChIP-seq
  • 47ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 74DNA binding
  • 63DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 41transcription factor
  • 27control
  • 12recombinant protein
  • 6histone
  • 6histone modification
  • 5broad histone mark
  • 1RNA binding protein
  • 1chromatin remodeller
  • 1narrow histone mark
Date released
  • 53November, 2017
  • 39May, 2022
  • 16February, 2021
  • 13December, 2017
  • 10January, 2019
  • 6August, 2017
  • 5January, 2018
  • 5September, 2017
  • 1December, 2018
  • 1September, 2020
Available data
  • 109fastq
  • 87bam
  • 65bigWig
  • 50bed narrowPeak
  • 40zippedFastqFolder
  • 36bigBed narrowPeak
  • 9bed bed3+
  • 5tsv
  • 4bed broadPeak
  • 4bigBed broadPeak
Organism
  • 149Homo sapiens
Biosample type
  • 64cell line
  • 64primary cell
  • tissue
  • 18in vitro differentiated cells
  • 3stem cell
Organ
  • 59liver
  • 48epithelium
  • 47pancreas
  • 6embryo
  • 5blood
  • 5bodily fluid
  • 3connective tissue
Project
  • 93AMP
  • 56HPAP
Genome assembly (visualization)
  • 60hg19
  • 55GRCh38
  • 5hg18
Lab
  • 93AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
Audit category:
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 15inconsistent control read length
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

149 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
total RNA-seq
Hi-C
single cell RNA-seq
cell line
HepG25351
GM128785
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
adipocyte3
definitive endodermal cell21
primitive gut cell21
stem cell
hESC21
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