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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 145ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 145DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 101transcription factor
  • 70recombinant protein
  • 39histone
  • 39histone modification
  • 20narrow histone mark
  • 19broad histone mark
  • 11RNA binding protein
  • 11chromatin remodeller
  • 5control
Date released
  • 71November, 2017
  • 32August, 2017
  • 20November, 2018
  • 15December, 2017
  • 7August, 2020
  • 5January, 2019
  • 4September, 2020
  • 2December, 2018
Available data
  • 155fastq
  • 149bigWig
  • 145bam
  • 139bed narrowPeak
  • 109bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 156Homo sapiens
Biosample type
  • 98cell line
  • tissue
  • 46in vitro differentiated cells
  • 12primary cell
Organ
  • 103liver
  • 31connective tissue
  • 25epithelium
  • 10blood
  • 10bodily fluid
  • 10pancreas
Project
  • 145AMP
  • 11HPAP
Genome assembly (visualization)
  • 149GRCh38
  • 136hg19
Lab
  • 145AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 2missing controlled_by
Audit category:
  • 3inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

156 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG288
GM1287810
in vitro differentiated cells
adipocyte31
hepatocyte15
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
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