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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
145
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
101
transcription factor
70
recombinant protein
39
histone
39
histone modification
20
narrow histone mark
19
broad histone mark
11
RNA binding protein
11
chromatin remodeller
5
control
Date released
71
November, 2017
32
August, 2017
20
November, 2018
15
December, 2017
7
August, 2020
5
January, 2019
4
September, 2020
2
December, 2018
Available data
155
fastq
149
bigWig
145
bam
139
bed narrowPeak
109
bigBed narrowPeak
1
zippedFastqFolder
Organism
156
Homo sapiens
Biosample type
98
cell line
tissue
46
in vitro differentiated cells
12
primary cell
Organ
103
liver
31
connective tissue
25
epithelium
10
blood
10
bodily fluid
10
pancreas
Project
145
AMP
11
HPAP
Genome assembly (visualization)
149
GRCh38
136
hg19
Lab
145
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
156 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
in vitro differentiated cells
adipocyte
31
hepatocyte
15
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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