Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
85
single cell RNA-seq
71
ATAC-seq
48
snATAC-seq
33
total RNA-seq
2
DNase-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
121
DNA accessibility
118
Transcription
98
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
87
transcription factor
11
RNA binding protein
11
chromatin remodeller
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
93
May, 2022
44
November, 2017
41
September, 2018
39
February, 2021
26
December, 2018
25
September, 2020
22
November, 2018
13
January, 2019
7
April, 2018
7
August, 2020
7
July, 2018
6
August, 2017
5
September, 2017
2
August, 2018
2
October, 2018
1
June, 2018
Available data
247
fastq
176
bigWig
172
bam
116
bed narrowPeak
116
bigBed narrowPeak
94
zippedFastqFolder
49
tsv
2
bed broadPeak
2
bigBed broadPeak
2
csv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
340
Homo sapiens
Biosample type
234
primary cell
tissue
104
cell line
2
in vitro differentiated cells
Organ
110
epithelium
110
pancreas
59
liver
45
blood
45
bodily fluid
2
connective tissue
1
adipose tissue
Project
176
AMP
164
HPAP
Genome assembly (visualization)
173
GRCh38
165
hg19
Lab
176
AMP-T2D consortium
164
Klaus Kaestner, Upenn
Audit category:
27
audit script error
Audit category:
7
missing controlled_by
Audit category:
9
inconsistent control run_type
8
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
340 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
pCHi-C
primary cell
Langerhans cell
67
48
pancreatic alpha cell
3
35
10
pancreatic beta cell
2
23
10
pancreatic acinar cell
2
9
4
pancreatic ductal cell
2
4
4
+ See 4 more…
cell line
HepG2
52
5
1
1
GM12878
45
in vitro differentiated cells
adipocyte
1
white fat cell
1
See all biosamples
Download