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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
85
single cell RNA-seq
71
ATAC-seq
48
WGBS
48
snATAC-seq
33
total RNA-seq
2
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
121
DNA accessibility
118
Transcription
98
DNA binding
48
DNA methylation
1
3D chromatin structure
Target of assay
87
transcription factor
11
RNA binding protein
11
chromatin remodeller
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
134
May, 2022
45
February, 2021
44
November, 2017
41
September, 2018
26
December, 2018
25
September, 2020
22
November, 2018
13
January, 2019
7
April, 2018
7
August, 2020
7
July, 2018
6
August, 2017
5
September, 2017
2
August, 2018
2
October, 2018
1
June, 2018
Available data
253
fastq
176
bigWig
172
bam
135
zippedFastqFolder
116
bed narrowPeak
116
bigBed narrowPeak
55
tsv
2
bed broadPeak
2
bigBed broadPeak
2
csv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
387
Homo sapiens
Biosample type
281
primary cell
tissue
104
cell line
2
in vitro differentiated cells
Organ
157
epithelium
157
pancreas
59
liver
45
blood
45
bodily fluid
2
connective tissue
1
adipose tissue
Project
211
HPAP
176
AMP
Genome assembly (visualization)
173
GRCh38
165
hg19
Lab
211
Klaus Kaestner, Upenn
176
AMP-T2D consortium
Audit category:
27
audit script error
Audit category:
7
missing controlled_by
Audit category:
9
inconsistent control run_type
8
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
387 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
total RNA-seq
DNase-seq
Hi-C
pCHi-C
primary cell
Langerhans cell
67
48
pancreatic alpha cell
3
35
31
10
pancreatic beta cell
2
23
16
10
pancreatic acinar cell
2
9
4
pancreatic ductal cell
2
4
4
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cell line
HepG2
52
1
5
1
GM12878
45
in vitro differentiated cells
adipocyte
1
white fat cell
1
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