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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 98ChIP-seq
  • 85single cell RNA-seq
  • 71ATAC-seq
  • 48WGBS
  • 48snATAC-seq
  • 33total RNA-seq
  • 2DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 121DNA accessibility
  • 118Transcription
  • 98DNA binding
  • 48DNA methylation
  • 13D chromatin structure
Target of assay
  • 87transcription factor
  • 11RNA binding protein
  • 11chromatin remodeller
  • 6control
  • 2histone
  • 2histone modification
  • 2narrow histone mark
Date released
  • 134May, 2022
  • 45February, 2021
  • 44November, 2017
  • 41September, 2018
  • 26December, 2018
  • 25September, 2020
  • 22November, 2018
  • 13January, 2019
  • 7April, 2018
  • 7August, 2020
  • 7July, 2018
  • 6August, 2017
  • 5September, 2017
  • 2August, 2018
  • 2October, 2018
  • 1June, 2018
Available data
  • 253fastq
  • 176bigWig
  • 172bam
  • 135zippedFastqFolder
  • 116bed narrowPeak
  • 116bigBed narrowPeak
  • 55tsv
  • 2bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
Organism
  • 387Homo sapiens
Biosample type
  • 281primary cell
  • tissue
  • 104cell line
  • 2in vitro differentiated cells
Organ
  • 157epithelium
  • 157pancreas
  • 59liver
  • 45blood
  • 45bodily fluid
  • 2connective tissue
  • 1adipose tissue
Project
  • 211HPAP
  • 176AMP
Genome assembly (visualization)
  • 173GRCh38
  • 165hg19
Lab
  • 211Klaus Kaestner, Upenn
  • 176AMP-T2D consortium
Audit category:
  • 27audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

387 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
total RNA-seq
DNase-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell3353110
pancreatic beta cell2231610
pancreatic acinar cell294
pancreatic ductal cell244
cell line
HepG252151
GM1287845
in vitro differentiated cells
adipocyte1
white fat cell1
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