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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 541ChIP-seq
  • 107total RNA-seq
  • 96single cell RNA-seq
  • 5GRO-seq
  • 1DNase-seq
  • 1RRBS
Assay category
  • 541DNA binding
  • 203Transcription
  • 1DNA accessibility
  • 1DNA methylation
Target of assay
  • 288transcription factor
  • 156histone
  • 156histone modification
  • 95control
  • 82narrow histone mark
  • 82recombinant protein
  • 73broad histone mark
  • 63RNA binding protein
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 281November, 2017
  • 108August, 2017
  • 76February, 2023
  • 46December, 2017
  • 42July, 2018
  • 40November, 2018
  • 39February, 2018
  • 35September, 2020
  • 32September, 2018
  • 31April, 2018
  • 10January, 2019
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 733fastq
  • 633bam
  • 555bigWig
  • 418bed narrowPeak
  • 292bigBed narrowPeak
  • 92tsv
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 24tagAlign
  • 22bed bed3+
  • 19zippedFastqFolder
  • 3tar
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 751Homo sapiens
Biosample type
  • 324cell line
  • 284primary cell
  • tissue
  • 139in vitro differentiated cells
  • 4stem cell
Organ
  • 324liver
  • 182pancreas
  • 181epithelium
  • 56connective tissue
  • 27embryo
  • 15blood
  • 15bodily fluid
  • 9brain
  • 6vasculature
  • 3blood vessel
Project
  • 640AMP
  • 111HPAP
Genome assembly (visualization)
  • 553hg19
  • 501GRCh38
  • 5hg18
Lab
  • 640AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 11inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 57missing controlled_by
Audit category:
  • 43inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

751 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
GRO-seq
DNase-seq
RRBS
cell line
HepG2309
GM1287815
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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