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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
total RNA-seq
9
RRBS
5
ChIP-seq
5
single cell RNA-seq
4
Hi-C
2
small RNA-seq
Assay category
25
Transcription
9
DNA methylation
5
DNA binding
4
3D chromatin structure
Target of assay
4
control
3
histone
3
histone modification
2
broad histone mark
1
RNA binding protein
1
narrow histone mark
1
transcription factor
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
March, 2023
Available data
31
bigWig
28
bam
25
tsv
9
bed bedMethyl
9
bigBed bedMethyl
4
bed bed3+
4
bed narrowPeak
4
bigBed narrowPeak
4
hdf5
Organism
43
Homo sapiens
Biosample type
tissue
41
primary cell
2
in vitro differentiated cells
Organ
23
epithelium
12
kidney
8
connective tissue
7
brain
7
liver
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
43
AMP
Genome assembly (visualization)
40
hg19
27
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
2
audit script error
biosample_type!
tissue
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
43 results
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total RNA-seq
RRBS
ChIP-seq
single cell RNA-seq
Hi-C
small RNA-seq
primary cell
kidney epithelial cell
1
1
5
hepatocyte
5
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
mesenchymal stem cell of adipose
1
1
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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