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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
50
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
25
December, 2018
13
November, 2018
12
January, 2019
8
January, 2021
1
January, 2018
Available data
50
bam
50
fastq
45
bigWig
44
bed narrowPeak
44
bigBed narrowPeak
Organism
59
Homo sapiens
Biosample type
51
cell line
8
primary cell
Organ
499
epithelium
432
pancreas
409
liver
135
connective tissue
103
vasculature
97
blood vessel
80
heart
68
artery
59
blood
59
bodily fluid
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
51
AMP
8
T1D
Genome assembly (visualization)
45
hg19
44
GRCh38
Lab
51
AMP-T2D consortium
8
Kyle Gaulton, UCSD
biosample_type!
tissue
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
October, 2022
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
50
1
primary cell
peripheral blood mononuclear cell
8
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