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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
14
ChIP-seq
8
ATAC-seq
7
DNase-seq
4
Hi-C
2
RRBS
1
FAIRE-seq
1
small RNA-seq
Assay category
56
Transcription
16
DNA accessibility
14
DNA binding
4
3D chromatin structure
2
DNA methylation
Target of assay
25
histone
histone modification
13
broad histone mark
12
narrow histone mark
8
control
6
transcription factor
2
RNA binding protein
Date released
66
February, 2021
8
July, 2019
7
June, 2019
6
October, 2019
4
November, 2017
1
March, 2020
Available data
86
bam
74
bigWig
56
tsv
22
bed narrowPeak
10
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
tagAlign
4
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
92
Homo sapiens
Biosample type
tissue
66
cell line
26
primary cell
Organ
416
epithelium
397
liver
363
pancreas
92
connective tissue
86
vasculature
81
blood vessel
78
heart
68
artery
68
blood
68
bodily fluid
45
kidney
25
embryo
18
brain
7
vein
6
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
92
AMP
Genome assembly (visualization)
85
hg19
77
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
biosample_type!
tissue
lab.title!
Stephen Parker, UMich
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
small RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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