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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 18ChIP-seq
  • 9total RNA-seq
  • 5STARR-seq
  • 1Hi-C
  • 1whole genome sequencing assay
Assay category
  • 18DNA binding
  • 9Transcription
  • 13D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 34August, 2021
Available data
  • 14bed narrowPeak
  • 14bigWig
  • 9tsv
  • 1bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 34Homo sapiens
Biosample type
  • 34cell line
  • tissue
Organ
  • 31liver
  • 2kidney
Project
  • 34AMP
Genome assembly (visualization)
  • 15hg19
Lab
  • 1487AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 291Kyle Gaulton, UCSD
  • 34Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 1inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

34 results

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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2189211
HEK293T2
Synthesized DNA1
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