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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
142
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
16
pCHi-C
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
227
Transcription
154
DNA binding
61
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
233
May, 2021
54
May, 2022
45
May, 2020
44
February, 2023
40
September, 2020
39
February, 2021
8
January, 2021
Available data
220
bigWig
180
bam
114
bed narrowPeak
100
fastq
96
tsv
84
tagAlign
73
zippedFastqFolder
2
bed bed3+
Organism
463
Homo sapiens
Biosample type
411
primary cell
tissue
47
in vitro differentiated cells
5
cell line
Organ
epithelium
152
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
209
T1D
172
HPAP
82
AMP
Genome assembly (visualization)
220
hg19
180
GRCh38
Lab
1136
AMP-T2D consortium
291
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
0
Katalin Susztak, Upenn
0
Xin Sun, UCSD
Audit category:
27
audit script error
5
inconsistent ontology term
biosample_type!
tissue
organ_slims!
epithelium
BIOSAMPLE
ASSAY
463 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
+ See 33 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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