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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
20
total RNA-seq
19
ATAC-seq
8
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
2
RRBS
2
small RNA-seq
1
Hi-C
Assay category
89
DNA binding
27
DNA accessibility
26
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
53
histone
53
histone modification
28
broad histone mark
24
narrow histone mark
23
transcription factor
13
control
5
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
28
June, 2019
13
February, 2023
11
February, 2021
11
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
108
bam
100
bigWig
71
bed narrowPeak
58
fastq
27
bigBed narrowPeak
23
tsv
22
bed bed3+
14
tagAlign
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3
4
bed bedgraph
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
151
Homo sapiens
Biosample type
tissue
97
in vitro differentiated cells
53
primary cell
1
stem cell
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
150
AMP
1
T1D
Genome assembly (visualization)
119
hg19
97
GRCh38
Lab
146
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
26
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
tissue
month_released!
April, 2020
organ_slims!
vasculature
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
RRBS
small RNA-seq
Hi-C
in vitro differentiated cells
adipocyte
67
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
1
1
cardiac fibroblast
5
3
1
osteoblast
5
2
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
+ See 9 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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