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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
8
ATAC-seq
7
ChIP-seq
3
DNase-seq
1
RRBS
Assay category
57
Transcription
11
DNA accessibility
7
DNA binding
1
DNA methylation
Target of assay
5
transcription factor
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
64
February, 2021
6
June, 2019
5
July, 2019
1
May, 2021
Available data
75
bam
67
bigWig
57
tsv
18
bed narrowPeak
6
bigBed narrowPeak
4
tagAlign
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
76
Homo sapiens
Biosample type
tissue
64
cell line
11
primary cell
1
in vitro differentiated cells
Organ
474
epithelium
415
pancreas
338
liver
122
connective tissue
97
vasculature
92
blood vessel
76
heart
66
artery
63
blood
63
bodily fluid
47
kidney
22
embryo
20
vein
15
brain
12
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
76
AMP
Genome assembly (visualization)
75
GRCh38
75
hg19
Lab
76
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
biosample_type!
tissue
month_released!
August, 2021
organ_slims!
limb
target.investigated_as!
control
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
8
4
primary cell
cardiac fibroblast
3
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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