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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
25
ChIP-seq
8
ATAC-seq
4
DNase-seq
4
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
25
DNA binding
13
DNA accessibility
4
3D chromatin structure
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
5
control
5
transcription factor
RNA binding protein
Date released
66
February, 2021
21
October, 2019
4
July, 2019
2
June, 2019
2
November, 2017
1
March, 2020
Available data
92
bam
79
bigWig
54
tsv
28
bed narrowPeak
16
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3+
6
tagAlign
2
fastq
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
96
Homo sapiens
Biosample type
tissue
66
cell line
30
primary cell
Organ
501
epithelium
440
pancreas
374
liver
132
connective tissue
101
vasculature
96
blood vessel
79
heart
68
artery
59
blood
59
bodily fluid
53
kidney
37
embryo
22
vein
18
brain
14
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
96
AMP
Genome assembly (visualization)
88
hg19
81
GRCh38
Lab
96
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
month_released!
March, 2023
organ_slims!
thymus
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
96 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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