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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
Assay category
49
DNA binding
Target of assay
356
histone
356
histone modification
181
broad histone mark
174
narrow histone mark
172
transcription factor
90
control
49
RNA binding protein
23
recombinant protein
19
chromatin remodeller
3
nucleotide modification
Date released
November, 2017
21
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
44
bed narrowPeak
44
bigWig
43
bam
38
bigBed narrowPeak
37
fastq
2
bed broadPeak
2
bigBed broadPeak
Organism
49
Homo sapiens
Biosample type
31
cell line
tissue
11
in vitro differentiated cells
7
primary cell
Organ
22
liver
10
blood
10
bodily fluid
6
epithelium
5
connective tissue
2
kidney
1
eye
1
heart
1
pancreas
Project
49
AMP
Genome assembly (visualization)
44
hg19
42
GRCh38
Lab
43
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
1
inconsistent control run_type
biosample_type!
tissue
month_released!
November, 2017
organ_slims!
brain
vasculature
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
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