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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
DNase-seq
1
WGBS
1
whole genome sequencing assay
Assay category
63
DNA binding
14
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
56
transcription factor
20
RNA binding protein
16
recombinant protein
5
chromatin remodeller
4
control
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
November, 2017
46
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
June, 2019
1
May, 2020
Available data
65
bigWig
60
bed narrowPeak
53
bam
52
fastq
45
bigBed narrowPeak
15
tsv
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
1
vcf
Organism
87
Homo sapiens
Biosample type
tissue
86
cell line
1
primary cell
Organ
epithelium
441
pancreas
137
connective tissue
115
liver
97
vasculature
94
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
14
musculature of body
12
brain
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
87
AMP
Genome assembly (visualization)
65
hg19
52
GRCh38
Lab
56
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
month_released!
November, 2017
organ_slims!
epithelium
pituitary gland
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
DNase-seq
WGBS
whole genome sequencing assay
cell line
HepG2
63
14
2
2
2
1
1
1
primary cell
hepatic stellate cell
1
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