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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ChIP-seq
44
single cell RNA-seq
26
total RNA-seq
17
ATAC-seq
3
DNase-seq
1
RRBS
Assay category
152
DNA binding
70
Transcription
20
DNA accessibility
1
DNA methylation
Target of assay
107
histone
107
histone modification
53
broad histone mark
53
narrow histone mark
24
transcription factor
21
control
6
RNA binding protein
3
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
227
bam
223
fastq
209
bigWig
122
bed narrowPeak
69
tsv
34
bigBed narrowPeak
26
tagAlign
15
bed broadPeak
15
bigBed broadPeak
7
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
243
Homo sapiens
Biosample type
tissue
175
primary cell
68
in vitro differentiated cells
Organ
146
pancreas
123
epithelium
70
connective tissue
Project
243
AMP
Genome assembly (visualization)
211
hg19
206
GRCh38
Lab
243
AMP-T2D consortium
Audit category:
49
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
tissue
month_released!
February, 2020
BIOSAMPLE
ASSAY
243 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
primary cell
pancreatic beta cell
13
3
10
5
pancreatic alpha cell
13
3
10
4
pancreatic ductal cell
13
6
4
4
pancreatic endocrine cell
23
pancreatic acinar cell
8
6
2
4
+ See 7 more…
in vitro differentiated cells
adipocyte
67
1
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