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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
3
ATAC-seq
3
DNase-seq
3
Hi-C
1
MPRA
1
RRBS
Assay category
125
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
78
histone
78
histone modification
39
narrow histone mark
38
broad histone mark
25
transcription factor
22
control
7
RNA binding protein
3
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
117
bam
112
fastq
98
bigWig
80
bed narrowPeak
26
tagAlign
24
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
7
bed bed3+
3
bedpe bed3+
3
cool
3
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
135
Homo sapiens
Biosample type
tissue
68
in vitro differentiated cells
67
primary cell
1
cell line
Organ
68
connective tissue
44
pancreas
37
epithelium
5
kidney
Project
133
AMP
3
HPAP
Genome assembly (visualization)
103
hg19
95
GRCh38
Lab
133
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
3
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
136 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
MPRA
RRBS
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
1
pancreatic beta cell
13
1
1
pancreatic endocrine cell
12
kidney epithelial cell
5
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cell line
MIN6
1
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