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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
27
snATAC-seq
21
ATAC-seq
12
single cell RNA-seq
8
ChIP-seq
6
WGBS
2
pCHi-C
Assay category
113
Transcription
48
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
358
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
62
November, 2018
59
September, 2020
55
June, 2019
51
October, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
23
January, 2019
23
March, 2020
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
120
bam
114
bigWig
107
tsv
52
fastq
15
bed narrowPeak
8
tagAlign
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
177
Homo sapiens
Biosample type
tissue
96
cell line
55
primary cell
26
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
39
epithelium
39
pancreas
11
connective tissue
2
liver
Project
125
AMP
52
HPAP
Genome assembly (visualization)
123
GRCh38
122
hg19
Lab
125
AMP-T2D consortium
52
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
27
audit script error
1
inconsistent replicate
biosample_type!
tissue
organ_slims!
bone marrow
vein
BIOSAMPLE
ASSAY
177 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
5
6
osteoblast
1
1
1
pancreatic beta cell
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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