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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 43ChIP-seq
  • 24total RNA-seq
  • 12ATAC-seq
  • 5STARR-seq
  • 4Capture-C
  • 1Hi-C
  • 1whole genome sequencing assay
Assay category
  • 43DNA binding
  • 24Transcription
  • 12DNA accessibility
  • 13D chromatin structure
  • 1DNA sequencing
Target of assay
  • 20histone
  • 20histone modification
  • 12control
  • 11narrow histone mark
  • 11transcription factor
  • 9broad histone mark
  • 1RNA binding protein
Date released
  • 359May, 2021
  • 324November, 2017
  • 170February, 2021
  • 148May, 2020
  • 134May, 2022
  • 127August, 2017
  • 110February, 2023
  • 90August, 2021
  • 73September, 2018
  • 72October, 2019
  • 62November, 2018
  • 59September, 2020
  • 55June, 2019
  • 48July, 2018
  • 46December, 2017
  • 43April, 2018
  • 39February, 2018
  • 31July, 2019
  • 28December, 2018
  • 24March, 2020
  • 23January, 2019
  • 21November, 2019
  • 12November, 2020
  • 8January, 2021
  • 7August, 2020
  • 7December, 2019
  • 6January, 2018
  • 5March, 2023
  • 5May, 2019
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
Available data
  • 49bam
  • 47bigWig
  • 42bed narrowPeak
  • 24tagAlign
  • 24tsv
  • 5bed bed3+
  • 1bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 90Homo sapiens
Biosample type
  • tissue
  • 44cell line
  • 42in vitro differentiated cells
  • 4primary cell
Organ
  • 35liver
  • 8embryo
  • 6epithelium
  • 4connective tissue
  • 2kidney
  • 2pancreas
Project
  • 90AMP
Genome assembly (visualization)
  • 59hg19
  • 41GRCh38
Lab
  • 52AMP-T2D consortium
  • 34Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

90 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2189211
H1-hESC8
EndoC_BH12
HEK293T2
Synthesized DNA1
in vitro differentiated cells
neural progenitor cell21710
adipocyte11
osteoblast11
primary cell
hepatocyte4
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