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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
1
WGBS
1
single cell RNA-seq
Assay category
80
DNA binding
1
DNA methylation
1
Transcription
Target of assay
68
transcription factor
26
histone
histone modification
23
RNA binding protein
16
recombinant protein
14
narrow histone mark
12
broad histone mark
12
control
8
chromatin remodeller
Date released
306
November, 2017
219
May, 2021
170
February, 2021
148
May, 2020
134
May, 2022
February, 2023
70
August, 2021
62
November, 2018
59
September, 2020
52
August, 2017
48
July, 2018
44
October, 2019
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
28
December, 2018
23
February, 2018
23
March, 2020
22
January, 2019
20
December, 2017
12
November, 2020
11
November, 2019
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
May, 2019
2
October, 2018
Available data
82
fastq
81
bam
68
bigWig
67
bed narrowPeak
58
bigBed narrowPeak
5
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
82
Homo sapiens
Biosample type
tissue
61
cell line
19
in vitro differentiated cells
1
primary cell
1
stem cell
Organ
49
liver
15
blood
15
bodily fluid
7
embryo
5
epithelium
Project
82
AMP
Genome assembly (visualization)
73
GRCh38
70
hg19
Lab
82
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
9
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
month_released!
February, 2023
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
in vitro differentiated cells
pancreatic endoderm
5
Posterior foregut
3
definitive endodermal cell
3
hepatocyte
3
primitive gut cell
3
+ See 1 more…
primary cell
pancreatic cell
1
stem cell
hESC
1
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