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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 101total RNA-seq
  • 27snATAC-seq
  • 14ATAC-seq
  • 12single cell RNA-seq
  • 8ChIP-seq
  • 6WGBS
  • 2pCHi-C
Assay category
  • 113Transcription
  • 41DNA accessibility
  • 8DNA binding
  • 6DNA methylation
Target of assay
  • 5transcription factor
  • 3control
Date released
  • 359May, 2021
  • 324November, 2017
  • 170February, 2021
  • 148May, 2020
  • 134May, 2022
  • 127August, 2017
  • 110February, 2023
  • 90August, 2021
  • 73September, 2018
  • 72October, 2019
  • 62November, 2018
  • 59September, 2020
  • 55June, 2019
  • 48July, 2018
  • 46December, 2017
  • 43April, 2018
  • 39February, 2018
  • 31July, 2019
  • 28December, 2018
  • 24March, 2020
  • 23January, 2019
  • 21November, 2019
  • 12November, 2020
  • 8January, 2021
  • 7August, 2020
  • 7December, 2019
  • 6January, 2018
  • 5March, 2023
  • 5May, 2019
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
Available data
  • 120bam
  • 107bigWig
  • 107tsv
  • 45fastq
  • 15bed narrowPeak
  • 8tagAlign
  • 4bed bedgraph
  • 2bed bed3
  • 2bed bed3+
Organism
  • 170Homo sapiens
Biosample type
  • tissue
  • 96cell line
  • 48primary cell
  • 26in vitro differentiated cells
Organ
  • 66artery
  • 66blood vessel
  • 66heart
  • 66vasculature
  • 32epithelium
  • 32pancreas
  • 11connective tissue
  • 2liver
Project
  • 125AMP
  • 45HPAP
Genome assembly (visualization)
  • 122hg19
  • 116GRCh38
Lab
  • 125AMP-T2D consortium
  • 45Klaus Kaestner, Upenn
Audit category:
  • 44inconsistent ontology term
  • 27audit script error
  • 1inconsistent replicate
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

170 results

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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
cell line
smooth muscle cell of the coronary artery5286
EndoC_BH126
HepG211
iPSC derived cell line2
primary cell
Langerhans cell2712
pancreatic alpha cell6
osteoblast111
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)18
adipocyte44
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