Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 80total RNA-seq
  • 24ATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
Assay category
  • 80Transcription
  • 24DNA accessibility
Date released
  • 359May, 2021
  • 324November, 2017
  • 170February, 2021
  • 148May, 2020
  • 134May, 2022
  • 127August, 2017
  • 110February, 2023
  • 90August, 2021
  • 73September, 2018
  • 72October, 2019
  • 62November, 2018
  • 59September, 2020
  • 55June, 2019
  • 48July, 2018
  • 46December, 2017
  • 43April, 2018
  • 39February, 2018
  • 31July, 2019
  • 28December, 2018
  • 24March, 2020
  • 23January, 2019
  • 21November, 2019
  • 12November, 2020
  • 8January, 2021
  • 7August, 2020
  • 7December, 2019
  • 6January, 2018
  • 5March, 2023
  • 5May, 2019
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
Available data
  • 76fastq
  • 12tsv
  • 5bed bed3
  • 4bed bed3+
  • 3bed bedgraph
  • 3bigWig
  • 3txt
  • 2bed narrowPeak
Organism
  • 109Homo sapiens
Biosample type
  • tissue
  • 88primary cell
  • 16in vitro differentiated cells
  • 6cell line
Organ
  • 38epithelium
  • 38pancreas
  • 13connective tissue
Project
  • 76HPAP
  • 29AMP
  • 5T1D
Genome assembly (visualization)
  • 12hg19
Lab
  • 76Klaus Kaestner, Upenn
  • 26AMP-T2D consortium
  • 5Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 11inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

110 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
primary cell
exocrine cell39
pancreatic alpha cell27
pancreatic beta cell10
gabaergic neuron3
glutamatergic neuron3
in vitro differentiated cells
chondrocyte5
immature adipocyte22
adipocyte11
preadipocyte11
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH1321
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego