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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
33
single cell RNA-seq
21
snATAC-seq
15
ChIP-seq
5
total RNA-seq
Assay category
60
DNA accessibility
41
DNA methylation
38
Transcription
15
DNA binding
Target of assay
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
control
1
histone
1
histone modification
1
narrow histone mark
Date released
350
May, 2021
265
November, 2017
167
February, 2021
148
May, 2020
134
May, 2022
110
February, 2023
106
August, 2017
78
August, 2021
73
September, 2018
60
October, 2019
59
November, 2018
59
September, 2020
48
July, 2018
47
June, 2019
43
April, 2018
37
December, 2017
31
February, 2018
28
December, 2018
28
July, 2019
24
March, 2020
20
January, 2019
19
November, 2019
9
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
September, 2017
4
August, 2018
4
May, 2019
4
October, 2022
3
June, 2018
2
October, 2018
Available data
134
zippedFastqFolder
20
bam
20
bigWig
20
fastq
15
bed narrowPeak
15
bigBed narrowPeak
5
tsv
Organism
154
Homo sapiens
Biosample type
134
primary cell
tissue
20
cell line
Organ
80
epithelium
80
pancreas
15
blood
15
bodily fluid
5
liver
Project
134
HPAP
20
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
134
Klaus Kaestner, Upenn
20
AMP-T2D consortium
biosample_type!
tissue
organ_slims!
limb
target.investigated_as!
control
BIOSAMPLE
ASSAY
154 results
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Clear Filters
WGBS
ATAC-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
total RNA-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cell line
GM12878
15
HepG2
5
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