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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
single cell RNA-seq
6
MeRIP-seq
4
ChIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
52
Transcription
4
DNA binding
2
DNA accessibility
Target of assay
4
control
3
histone
3
histone modification
3
nucleotide modification
2
broad histone mark
RNA binding protein
1
narrow histone mark
1
transcription factor
Date released
354
May, 2021
287
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
121
August, 2017
110
February, 2023
89
August, 2021
73
September, 2018
72
October, 2019
59
September, 2020
51
June, 2019
48
July, 2018
44
December, 2017
43
April, 2018
41
November, 2018
39
February, 2018
31
July, 2019
26
December, 2018
24
March, 2020
20
November, 2019
17
January, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
September, 2017
4
August, 2018
4
May, 2019
4
October, 2022
3
June, 2018
2
October, 2018
Available data
58
bam
56
bigWig
52
tsv
48
fastq
5
bed narrowPeak
4
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
64
Homo sapiens
Biosample type
tissue
58
primary cell
6
cell line
Organ
43
epithelium
43
pancreas
8
connective tissue
4
kidney
Project
64
AMP
Genome assembly (visualization)
57
GRCh38
57
hg19
Lab
58
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
14
inconsistent ontology term
biosample_type!
tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
64 results
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single cell RNA-seq
MeRIP-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
osteoblast
4
1
1
pancreatic acinar cell
5
kidney epithelial cell
4
+ See 12 more…
cell line
EndoC_BH1
6
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