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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
314
ChIP-seq
13
total RNA-seq
9
RRBS
4
Hi-C
3
single cell RNA-seq
2
small RNA-seq
Assay category
314
DNA binding
18
Transcription
9
DNA methylation
4
3D chromatin structure
Target of assay
244
transcription factor
66
recombinant protein
62
control
37
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
narrow histone mark
8
broad histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
295
May, 2021
170
February, 2021
148
May, 2020
134
May, 2022
110
February, 2023
89
August, 2017
79
August, 2021
62
November, 2018
60
October, 2019
59
September, 2020
58
September, 2018
48
July, 2018
44
June, 2019
43
April, 2018
32
December, 2017
31
February, 2018
31
July, 2019
28
December, 2018
23
March, 2020
22
January, 2019
17
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
September, 2017
4
August, 2018
4
May, 2019
4
October, 2022
3
June, 2018
2
October, 2018
Available data
331
bam
314
fastq
289
bigWig
246
bed narrowPeak
246
bigBed narrowPeak
55
bed broadPeak
55
bigBed broadPeak
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
7
tagAlign
4
bed bed3+
4
hdf5
3
tar
Organism
345
Homo sapiens
Biosample type
308
cell line
tissue
37
primary cell
Organ
310
liver
17
epithelium
13
brain
9
vasculature
8
connective tissue
7
kidney
6
blood vessel
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
345
AMP
Genome assembly (visualization)
296
hg19
232
GRCh38
Lab
345
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
month_released!
March, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
345 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
Hi-C
single cell RNA-seq
small RNA-seq
cell line
HepG2
308
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
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