Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
63
total RNA-seq
40
single cell RNA-seq
31
ChIP-seq
24
DNase-seq
1
pCHi-C
Assay category
127
DNA accessibility
103
Transcription
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
145
bam
140
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
46
tsv
41
fastq
24
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
19
zippedFastqFolder
Organism
262
Homo sapiens
Biosample type
tissue
261
primary cell
1
cell line
Organ
39
epithelium
19
pancreas
17
connective tissue
13
kidney
11
musculature of body
8
heart
5
brain
4
eye
4
vasculature
3
liver
2
blood vessel
Project
158
AMP
59
HPAP
45
T1D
Genome assembly (visualization)
130
hg19
95
GRCh38
Lab
158
AMP-T2D consortium
59
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
33
inconsistent ontology term
biosample_type!
tissue
month_released!
July, 2018
BIOSAMPLE
ASSAY
262 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
DNase-seq
pCHi-C
primary cell
Langerhans cell
40
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
pancreatic alpha cell
2
15
macrophage
11
+ See 49 more…
cell line
HepG2
1
See all biosamples
Download