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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 12pCHi-C
  • 6total RNA-seq
  • 3Hi-C
  • 2ATAC-seq
  • 1ChIP-seq
Assay category
  • 6Transcription
  • 33D chromatin structure
  • 2DNA accessibility
  • 1DNA binding
Target of assay
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 359May, 2021
  • 324November, 2017
  • 170February, 2021
  • 148May, 2020
  • 134May, 2022
  • 127August, 2017
  • 110February, 2023
  • 90August, 2021
  • 73September, 2018
  • 72October, 2019
  • 62November, 2018
  • 59September, 2020
  • 55June, 2019
  • 48July, 2018
  • 46December, 2017
  • 43April, 2018
  • 39February, 2018
  • 31July, 2019
  • 28December, 2018
  • 24March, 2020
  • 23January, 2019
  • 21November, 2019
  • 12November, 2020
  • 8January, 2021
  • 7August, 2020
  • 7December, 2019
  • 6January, 2018
  • 5March, 2023
  • 5May, 2019
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
Available data
  • 17tsv
  • 9bigWig
  • 7bam
  • 5bedpe bed3+
  • 3hic
  • 2ibed
  • 1bed narrowPeak
Organism
  • 24Homo sapiens
Biosample type
  • tissue
  • 11cell line
  • 8in vitro differentiated cells
  • 4stem cell
  • 1primary cell
Organ
  • 6epithelium
  • 5pancreas
  • 2kidney
  • 1blood vessel
  • 1connective tissue
  • 1mammary gland
  • 1vasculature
  • 1vein
Project
  • 21AMP
  • 3T1D
Genome assembly (visualization)
  • 14hg19
  • 7GRCh38
Lab
  • 24AMP-T2D consortium
Audit category:
  • 15inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

24 results

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Clear Filters
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
cell line
EndoC_BH1221
early embryonic cell2
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)211
lymphocyte of B lineage (iPSC)111
embryonic stem cell1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
primary cell
endothelial cell of umbilical vein1
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