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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
ATAC-seq
1
Hi-C
1
WGBS
1
single cell RNA-seq
1
total RNA-seq
Assay category
73
DNA binding
6
DNA accessibility
2
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
58
transcription factor
22
RNA binding protein
16
recombinant protein
10
histone
10
histone modification
7
chromatin remodeller
6
broad histone mark
5
control
4
narrow histone mark
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
June, 2018
2
October, 2018
Available data
81
bam
73
bed narrowPeak
69
bigWig
62
fastq
56
bigBed narrowPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
1
tsv
Organism
83
Homo sapiens
Biosample type
77
cell line
tissue
5
in vitro differentiated cells
1
primary cell
Organ
46
liver
16
epithelium
16
pancreas
15
blood
15
bodily fluid
Project
83
AMP
Genome assembly (visualization)
75
GRCh38
73
hg19
Lab
83
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
month_released!
June, 2018
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
WGBS
single cell RNA-seq
total RNA-seq
cell line
HepG2
45
1
EndoC_BH1
13
1
1
1
GM12878
15
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
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