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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 835ChIP-seq
  • 367total RNA-seq
  • 180ATAC-seq
  • 119single cell RNA-seq
  • 56snATAC-seq
  • 32pCHi-C
  • 15DNase-seq
  • 10Hi-C
  • 5GRO-seq
  • 5STARR-seq
  • 4RRBS
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 2small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1WGBS
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 835DNA binding
  • 492Transcription
  • 251DNA accessibility
  • 103D chromatin structure
  • 6DNA methylation
  • 1DNA sequencing
Target of assay
  • 411transcription factor
  • 296histone
  • 296histone modification
  • 154broad histone mark
  • 141narrow histone mark
  • 126control
  • 89recombinant protein
  • 78RNA binding protein
  • 33chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 333May, 2021
  • 318November, 2017
  • 148May, 2020
  • 138February, 2021
  • 98August, 2017
  • 84August, 2021
  • 72February, 2023
  • 62November, 2018
  • 54May, 2022
  • 40September, 2020
  • 39February, 2018
  • 37October, 2019
  • 35June, 2019
  • 28December, 2018
  • 27December, 2017
  • 23January, 2019
  • 18July, 2019
  • 18March, 2020
  • 15July, 2018
  • 12September, 2018
  • 10April, 2018
  • 8January, 2021
  • 6January, 2018
  • 6November, 2020
  • 5March, 2023
  • 5November, 2019
  • 2December, 2019
  • 2June, 2018
  • 1August, 2018
  • 1October, 2022
Available data
  • 1168bam
  • 1096bigWig
  • 724fastq
  • 694bed narrowPeak
  • 405bigBed narrowPeak
  • 371tsv
  • 153tagAlign
  • 87bed broadPeak
  • 87bigBed broadPeak
  • 73zippedFastqFolder
  • 47bed bed3+
  • 8bedpe bed3+
  • 7bed bed3
  • 7bed bedgraph
  • 6hic
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 4txt
  • 3hdf5
  • 3tar
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 1640Homo sapiens
Biosample type
  • tissue
  • 682primary cell
  • 583cell line
  • 370in vitro differentiated cells
  • 10stem cell
Organ
  • epithelium
  • 441pancreas
  • 430liver
  • 137connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 69blood
  • 69bodily fluid
  • 68artery
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 1259AMP
  • 209T1D
  • 172HPAP
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1159hg19
  • 974GRCh38
  • 5hg18
Lab
  • 1136AMP-T2D consortium
  • 291Kyle Gaulton, UCSD
  • 172Klaus Kaestner, Upenn
  • 34Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 171inconsistent ontology term
  • 29audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 42missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • tissue
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

1645 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
Hi-C
GRO-seq
STARR-seq
RRBS
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
MPRA
WGBS
...and 3 more
primary cell
monocyte85541511
Langerhans cell8548
CD8-positive, alpha-beta T cell33421
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell21221
cell line
HepG23781412221
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
H1-hESC8
in vitro differentiated cells
adipocyte675811
cardiomyocytes359
embryonic stem cell40761
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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