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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
54
total RNA-seq
9
ATAC-seq
8
snATAC-seq
Assay category
65
DNA binding
54
Transcription
17
DNA accessibility
Target of assay
55
transcription factor
10
RNA binding protein
10
chromatin remodeller
8
control
1
histone
1
histone modification
narrow histone mark
Date released
66
February, 2021
27
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
2
July, 2019
1
January, 2018
Available data
127
bam
112
bigWig
65
bed narrowPeak
59
fastq
54
tsv
53
bigBed narrowPeak
6
tagAlign
Organism
136
Homo sapiens
Biosample type
126
cell line
tissue
10
primary cell
Organ
460
epithelium
414
liver
400
pancreas
117
connective tissue
95
vasculature
90
blood vessel
78
heart
68
artery
68
blood
68
bodily fluid
50
kidney
29
embryo
18
brain
16
vein
10
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
128
AMP
8
T1D
Genome assembly (visualization)
120
hg19
119
GRCh38
Lab
128
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
biosample_type!
tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
136 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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