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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 54total RNA-seq
  • 26ChIP-seq
  • 8ATAC-seq
  • 4DNase-seq
  • 4Hi-C
  • 1FAIRE-seq
Assay category
  • 54Transcription
  • 26DNA binding
  • 13DNA accessibility
  • 43D chromatin structure
Target of assay
  • 16histone
  • 16histone modification
  • 9broad histone mark
  • 7narrow histone mark
  • 5control
  • 5transcription factor
  • 1RNA binding protein
Date released
  • 66February, 2021
  • 21October, 2019
  • 4July, 2019
  • 3November, 2017
  • 2June, 2019
  • 1March, 2020
Available data
  • 93bam
  • 80bigWig
  • 54tsv
  • 29bed narrowPeak
  • 17bigBed narrowPeak
  • 8bed broadPeak
  • 8bigBed broadPeak
  • 6bed bed3+
  • 6tagAlign
  • 3fastq
  • 2hdf5
  • 2hic
  • 1bedpe bed3+
  • 1tar
Organism
  • 97Homo sapiens
Biosample type
  • tissue
  • 66cell line
  • 31primary cell
Organ
  • 509epithelium
  • 441pancreas
  • 430liver
  • 137connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 69blood
  • 69bodily fluid
  • 68artery
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 97AMP
Genome assembly (visualization)
  • 89hg19
  • 82GRCh38
Lab
  • 97AMP-T2D consortium
Audit category:
  • 1audit script error
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

97 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery5268
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
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