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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
5
DNase-seq
3
Hi-C
1
RRBS
Assay category
6
DNA binding
5
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
control
3
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
6
November, 2017
5
June, 2019
4
July, 2019
Available data
14
bigWig
11
bam
11
bed broadPeak
11
bed narrowPeak
11
bigBed broadPeak
11
bigBed narrowPeak
8
bed bed3+
6
fastq
3
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
15
Homo sapiens
Biosample type
tissue
15
primary cell
Organ
435
epithelium
380
pancreas
351
liver
102
connective tissue
88
vasculature
83
blood vessel
76
heart
66
artery
63
blood
63
bodily fluid
44
kidney
26
embryo
15
brain
11
vein
8
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
15
AMP
Genome assembly (visualization)
15
hg19
11
GRCh38
Lab
15
AMP-T2D consortium
biosample_type!
tissue
target.investigated_as!
broad histone mark
control
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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