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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 9ChIP-seq
  • 5DNase-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 1RRBS
Assay category
  • 9DNA binding
  • 5DNA accessibility
  • 33D chromatin structure
  • 3Transcription
  • 1DNA methylation
Target of assay
  • 6control
  • 3RNA binding protein
  • 3histone
  • 3histone modification
  • 3narrow histone mark
  • 3transcription factor
Date released
  • 9November, 2017
  • 7July, 2019
  • 5June, 2019
Available data
  • 20bigWig
  • 17bam
  • 11bed broadPeak
  • 11bed narrowPeak
  • 11bigBed broadPeak
  • 11bigBed narrowPeak
  • 9fastq
  • 8bed bed3+
  • 3hdf5
  • 3tsv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 21Homo sapiens
Biosample type
  • tissue
  • 21primary cell
Organ
  • 509epithelium
  • 441pancreas
  • 430liver
  • 137connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 69blood
  • 69bodily fluid
  • 68artery
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 21AMP
Genome assembly (visualization)
  • 21hg19
  • 14GRCh38
Lab
  • 21AMP-T2D consortium
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

21 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell311
choroid plexus epithelial cell311
brain pericyte11
cerebellar granule cell2
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