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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
19
ATAC-seq
19
total RNA-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
56
DNA binding
26
DNA accessibility
24
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
46
August, 2017
16
June, 2019
13
February, 2023
11
February, 2021
8
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
72
bam
66
bigWig
44
bed narrowPeak
36
fastq
21
tsv
17
bigBed narrowPeak
15
bed bed3+
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
114
Homo sapiens
Biosample type
tissue
75
in vitro differentiated cells
38
primary cell
1
stem cell
Organ
500
epithelium
439
pancreas
131
liver
114
connective tissue
97
vasculature
92
blood vessel
75
heart
64
artery
46
kidney
34
embryo
22
vein
18
blood
18
bodily fluid
18
brain
14
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
113
AMP
1
T1D
Genome assembly (visualization)
84
hg19
63
GRCh38
Lab
109
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
biosample_type!
tissue
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
Hi-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
45
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
osteoblast
2
5
1
1
cardiac fibroblast
4
3
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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