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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 19ATAC-seq
  • 19total RNA-seq
  • 7DNase-seq
  • 4pCHi-C
  • 4single cell RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RRBS
  • 1small RNA-seq
Assay category
  • 79DNA binding
  • 26DNA accessibility
  • 24Transcription
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 45histone
  • 45histone modification
  • 24broad histone mark
  • 23transcription factor
  • 20narrow histone mark
  • 11control
  • 5RNA binding protein
  • 2chromatin remodeller
Date released
  • 68August, 2017
  • 17June, 2019
  • 13February, 2023
  • 11February, 2021
  • 8July, 2019
  • 6November, 2020
  • 4August, 2021
  • 2April, 2018
  • 2July, 2018
  • 2May, 2021
  • 2October, 2019
  • 1August, 2018
  • 1March, 2020
Available data
  • 95bam
  • 89bigWig
  • 62bed narrowPeak
  • 58fastq
  • 21bed bed3+
  • 21tsv
  • 18bigBed narrowPeak
  • 14tagAlign
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hdf5
Organism
  • 137Homo sapiens
Biosample type
  • tissue
  • 97in vitro differentiated cells
  • 39primary cell
  • 1stem cell
Organ
  • 509epithelium
  • 441pancreas
  • 430liver
  • 137connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 69blood
  • 69bodily fluid
  • 68artery
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 136AMP
  • 1T1D
Genome assembly (visualization)
  • 107hg19
  • 86GRCh38
Lab
  • 132AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 18inconsistent ontology term
Audit category:
  • 5missing controlled_by
Audit category:
  • 6inconsistent control read length
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

137 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
Hi-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte678511
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
cardiac fibroblast531
osteoblast2511
mesenchymal stem cell7
pancreatic stellate cell4
brain pericyte11
stem cell
mesenchymal stem cell1
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